IL_7ZPQ_061

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_061 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1297

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7ZPQ|1|2|G|1213
7ZPQ|1|2|U|1214
7ZPQ|1|2|C|1215
*
7ZPQ|1|2|G|1448
7ZPQ|1|2|U|1449
7ZPQ|1|2|U|1450

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AK

40S ribosomal protein S10-A

Chain AP

RPS15 isoform 1

Chain Ad

RPS29A isoform 1

Chain Af

RPS31 isoform 1