IL_7ZPQ_093
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- ACGGAUC*GUGAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_093 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0777
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZPQ|1|3|A|13
7ZPQ|1|3|C|14
7ZPQ|1|3|G|15
7ZPQ|1|3|G|16
7ZPQ|1|3|A|17
7ZPQ|1|3|U|18
7ZPQ|1|3|C|19
*
7ZPQ|1|5|G|404
7ZPQ|1|5|U|405
7ZPQ|1|5|G|406
7ZPQ|1|5|A|407
7ZPQ|1|5|A|408
7ZPQ|1|5|A|409
7ZPQ|1|5|U|410
Current chains
- Chain 3
- 5.8S ribosomal RNA
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain BC
- RPL4A isoform 1
- Chain BO
- 60S ribosomal protein L17-A
- Chain Bd
- RPL32 isoform 1
Coloring options: