IL_7ZPQ_127

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_127 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1285

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZPQ|1|5|C|758
7ZPQ|1|5|U|759
7ZPQ|1|5|G|760
7ZPQ|1|5|A|761
7ZPQ|1|5|U|762
7ZPQ|1|5|G|763
*
7ZPQ|1|5|C|768
7ZPQ|1|5|G|769
7ZPQ|1|5|G|770
7ZPQ|1|5|A|771
7ZPQ|1|5|U|772
7ZPQ|1|5|G|773

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BK

60S ribosomal protein L13-A

Chain BZ

60S ribosomal protein L28

Chain Bn

60S ribosomal protein L42-A