IL_7ZPQ_130

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

7ZPQ|1|5|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_130 not in the Motif Atlas

Geometric match to IL_5TBW_029

Geometric discrepancy: 0.1063

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7ZPQ|1|5|G|833
7ZPQ|1|5|U|834
*
7ZPQ|1|5|G|859
7ZPQ|1|5|G|860
7ZPQ|1|5|C|861

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L2-A

Chain BQ

60S ribosomal protein L19-A

Chain Bo

60S ribosomal protein L43-A