IL_7ZPQ_138

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

7ZPQ|1|5|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_138 not in the Motif Atlas

Homologous match to IL_5TBW_037

Geometric discrepancy: 0.1014

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7ZPQ|1|5|A|983
7ZPQ|1|5|G|984
7ZPQ|1|5|U|985
*
7ZPQ|1|5|A|1099
7ZPQ|1|5|U|1100

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L7-A

Chain BS

60S ribosomal protein L21-A

Chain Ba

60S ribosomal protein L29