IL_7ZPQ_148

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_148 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.0757

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7ZPQ|1|5|U|1123
7ZPQ|1|5|U|1124
7ZPQ|1|5|U|1125
*
7ZPQ|1|5|A|1133
7ZPQ|1|5|G|1134
7ZPQ|1|5|A|1135

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain BI

RPL10 isoform 1

Chain BS

60S ribosomal protein L21-A

Chain Ba

60S ribosomal protein L29