IL_7ZPQ_159

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

7ZPQ|1|5|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_159 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.085

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7ZPQ|1|5|C|1385
7ZPQ|1|5|A|1386
7ZPQ|1|5|G|1387
*
7ZPQ|1|5|C|1420
7ZPQ|1|5|G|1421

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

RPL4A isoform 1

Chain BE

60S ribosomal protein L6-B

Chain Bd

RPL32 isoform 1