IL_7ZPQ_165

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_165 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2072

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7ZPQ|1|5|G|1561
7ZPQ|1|5|C|1562
7ZPQ|1|5|C|1563
*
7ZPQ|1|5|G|1577
7ZPQ|1|5|C|1578

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain BA

60S ribosomal protein L2-A

Chain BG

60S ribosomal protein L8-A

Chain BW

60S ribosomal protein L25