IL_7ZPQ_193

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7ZPQ|1|5|A|2397, 7ZPQ|1|5|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_193 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0808

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ZPQ|1|5|G|2396
7ZPQ|1|5|A|2397
7ZPQ|1|5|A|2398
*
7ZPQ|1|5|U|2981
7ZPQ|1|5|A|2982
7ZPQ|1|5|C|2983
7ZPQ|1|5|C|2984

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BO

60S ribosomal protein L17-A