IL_7ZPQ_199

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_199 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.0831

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7ZPQ|1|5|G|2614
7ZPQ|1|5|G|2615
*
7ZPQ|1|5|C|2625
7ZPQ|1|5|A|2626
7ZPQ|1|5|C|2627

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BI

RPL10 isoform 1

Chain BS

60S ribosomal protein L21-A

Chain Ba

60S ribosomal protein L29

Chain Bn

60S ribosomal protein L42-A