IL_7ZPQ_202

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_202 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.1602

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7ZPQ|1|5|G|2770
7ZPQ|1|5|U|2771
7ZPQ|1|5|C|2772
7ZPQ|1|5|C|2773
*
7ZPQ|1|5|G|2787
7ZPQ|1|5|C|2788

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BK

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L18-A

Chain BZ

60S ribosomal protein L28

Chain Bn

60S ribosomal protein L42-A