IL_7ZPQ_212

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7ZPQ|1|5|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_212 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1302

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7ZPQ|1|5|U|2891
7ZPQ|1|5|A|2892
*
7ZPQ|1|5|U|2909
7ZPQ|1|5|A|2910
7ZPQ|1|5|A|2911
7ZPQ|1|5|G|2912

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain BN

60S ribosomal protein L16-A

Chain Bl

60S ribosomal protein L40-A