IL_7ZPQ_214

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7ZPQ|1|5|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_214 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2629

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7ZPQ|1|5|C|2960
7ZPQ|1|5|G|2961
*
7ZPQ|1|5|C|2970
7ZPQ|1|5|A|2971
7ZPQ|1|5|G|2972

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain BA

60S ribosomal protein L2-A

Chain BI

RPL10 isoform 1