IL_7ZPQ_216

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_216 not in the Motif Atlas

Homologous match to IL_8C3A_124

Geometric discrepancy: 0.08

The information below is about IL_8C3A_124

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZPQ|1|5|A|3012
7ZPQ|1|5|U|3013
7ZPQ|1|5|U|3014
*
7ZPQ|1|5|A|3040
7ZPQ|1|5|U|3041
7ZPQ|1|5|U|3042

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BU

60S ribosomal protein L23-A