IL_7ZPQ_235

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

7ZPQ|1|5|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_235 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2334

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ZPQ|1|5|G|3340
7ZPQ|1|5|U|3341
7ZPQ|1|5|A|3342
*
7ZPQ|1|5|U|3363
7ZPQ|1|5|C|3364

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BV

RPL24A isoform 1