IL_7ZPQ_244

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AAUAG*CUUCU

Length

10 nucleotides

Bulged bases

7ZPQ|1|2|A|1346, 7ZPQ|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_244 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.2099

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZPQ|1|2|A|1345
7ZPQ|1|2|A|1346
7ZPQ|1|2|U|1347
7ZPQ|1|2|A|1348
7ZPQ|1|2|G|1349
*
7ZPQ|1|2|C|1376
7ZPQ|1|2|U|1377
7ZPQ|1|2|U|1378
7ZPQ|1|2|C|1379
7ZPQ|1|2|U|1380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AQ

40S ribosomal protein S16-A

Chain AT

40S ribosomal protein S19-A

Chain AU

RPS20 isoform 1