IL_7ZPQ_246

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_246 not in the Motif Atlas

Homologous match to IL_8P9A_238

Geometric discrepancy: 0.2625

The information below is about IL_8P9A_238

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7ZPQ|1|5|C|163
7ZPQ|1|5|A|164
7ZPQ|1|5|A|165
*
7ZPQ|1|5|U|257
7ZPQ|1|5|G|258

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BK

60S ribosomal protein L13-A

Chain Bg

60S ribosomal protein L35-A