IL_7ZPQ_247

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

7ZPQ|1|5|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_247 not in the Motif Atlas

Geometric match to IL_5TBW_010

Geometric discrepancy: 0.2679

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

7ZPQ|1|5|U|169
7ZPQ|1|5|G|170
*
7ZPQ|1|5|U|248
7ZPQ|1|5|U|249
7ZPQ|1|5|U|250
7ZPQ|1|5|G|251
7ZPQ|1|5|U|252
7ZPQ|1|5|A|253

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BG

60S ribosomal protein L8-A

Chain BK

60S ribosomal protein L13-A

Chain Bg

60S ribosomal protein L35-A