3D structure

PDB id
7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7ZQ5|1|b|A|504, 7ZQ5|1|b|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZQ5_016 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0919
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7ZQ5|1|b|G|481
7ZQ5|1|b|A|482
7ZQ5|1|b|A|483
7ZQ5|1|b|C|484
*
7ZQ5|1|b|G|496
7ZQ5|1|b|A|497
7ZQ5|1|b|G|498
7ZQ5|1|b|U|499
7ZQ5|1|b|G|500
7ZQ5|1|b|A|501
7ZQ5|1|b|A|502
7ZQ5|1|b|A|503
7ZQ5|1|b|A|504
7ZQ5|1|b|A|505
7ZQ5|1|b|G|506
7ZQ5|1|b|A|507
7ZQ5|1|b|A|508
7ZQ5|1|b|C|509

Current chains

Chain b
23S rRNA

Nearby chains

Chain s
50S ribosomal protein L22
Chain u
50S ribosomal protein L24

Coloring options:


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