3D structure

PDB id
7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GA*UGC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZQ5_030 not in the Motif Atlas
Geometric match to IL_5J7L_271
Geometric discrepancy: 0.1667
The information below is about IL_5J7L_271
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

7ZQ5|1|b|G|862
7ZQ5|1|b|A|863
*
7ZQ5|1|b|U|913
7ZQ5|1|b|G|914
7ZQ5|1|b|C|915

Current chains

Chain b
23S rRNA

Nearby chains

Chain a
5S ribosomal RNA; 5S rRNA
Chain m
50S ribosomal protein L16
Chain y
50S ribosomal protein L27

Coloring options:


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