3D structure

PDB id
7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
7ZQ5|1|b|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZQ5_039 not in the Motif Atlas
Geometric match to IL_4WF9_039
Geometric discrepancy: 0.1024
The information below is about IL_4WF9_039
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

7ZQ5|1|b|U|1018
7ZQ5|1|b|U|1019
7ZQ5|1|b|A|1020
7ZQ5|1|b|A|1021
7ZQ5|1|b|G|1022
7ZQ5|1|b|U|1023
7ZQ5|1|b|G|1024
*
7ZQ5|1|b|C|1140
7ZQ5|1|b|U|1141
7ZQ5|1|b|A|1142
7ZQ5|1|b|A|1143
7ZQ5|1|b|A|1144

Current chains

Chain b
23S rRNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain j
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1827 s