IL_7ZQ5_108

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_108 not in the Motif Atlas

Geometric match to IL_5J7L_353

Geometric discrepancy: 0.0772

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7ZQ5|1|b|G|2843
7ZQ5|1|b|G|2844
7ZQ5|1|b|U|2845
7ZQ5|1|b|G|2846
*
7ZQ5|1|b|C|2870
7ZQ5|1|b|U|2871
7ZQ5|1|b|A|2872
7ZQ5|1|b|A|2873
7ZQ5|1|b|C|2874

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19