IL_7ZRS_011

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

7ZRS|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.204

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZRS|1|2|U|144
7ZRS|1|2|A|145
7ZRS|1|2|U|146
7ZRS|1|2|A|147
7ZRS|1|2|A|148
7ZRS|1|2|C|149
*
7ZRS|1|2|G|165
7ZRS|1|2|C|166
7ZRS|1|2|U|167
7ZRS|1|2|A|168
7ZRS|1|2|A|169
7ZRS|1|2|U|170
7ZRS|1|2|A|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AY

40S ribosomal protein S24-A

Chain BV

RPL24A isoform 1