IL_7ZRS_013

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_013 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.2911

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZRS|1|2|C|186
7ZRS|1|2|G|187
7ZRS|1|2|A|188
7ZRS|1|2|C|189
*
7ZRS|1|2|G|196
7ZRS|1|2|A|197
7ZRS|1|2|A|198
7ZRS|1|2|G|199

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S8-A