IL_7ZRS_180

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7ZRS|1|5|G|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_180 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.071

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7ZRS|1|5|A|1902
7ZRS|1|5|G|1903
7ZRS|1|5|U|1904
7ZRS|1|5|C|1905
7ZRS|1|5|G|1906
7ZRS|1|5|G|1907
*
7ZRS|1|5|C|2334
7ZRS|1|5|U|2335
7ZRS|1|5|G|2336
7ZRS|1|5|U|2337

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BU

60S ribosomal protein L23-A