IL_7ZRS_189

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_189 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0784

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZRS|1|5|U|2212
7ZRS|1|5|C|2213
7ZRS|1|5|A|2214
7ZRS|1|5|A|2215
7ZRS|1|5|A|2216
7ZRS|1|5|G|2217
7ZRS|1|5|U|2218
*
7ZRS|1|5|A|2229
7ZRS|1|5|A|2230
7ZRS|1|5|C|2231
7ZRS|1|5|C|2232
7ZRS|1|5|A|2233
7ZRS|1|5|A|2234
7ZRS|1|5|G|2235

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain Bh

60S ribosomal protein L36-A