IL_7ZRS_206

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7ZRS|1|5|U|2861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_206 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0787

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZRS|1|5|G|2829
7ZRS|1|5|U|2830
7ZRS|1|5|G|2831
*
7ZRS|1|5|U|2859
7ZRS|1|5|U|2860
7ZRS|1|5|U|2861
7ZRS|1|5|U|2862
7ZRS|1|5|U|2863

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BI

RPL10 isoform 1