3D structure

PDB id
7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
UUUG*CUUA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZRS_230 not in the Motif Atlas
Homologous match to IL_5TBW_129
Geometric discrepancy: 0.1239
The information below is about IL_5TBW_129
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7ZRS|1|5|U|3301
7ZRS|1|5|U|3302
7ZRS|1|5|U|3303
7ZRS|1|5|G|3304
*
7ZRS|1|5|C|3312
7ZRS|1|5|U|3313
7ZRS|1|5|U|3314
7ZRS|1|5|A|3315

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain BB
60S ribosomal protein L3
Chain BO
60S ribosomal protein L17-A
Chain Bc
60S ribosomal protein L31-A

Coloring options:


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