3D structure

PDB id
7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZS5_028 not in the Motif Atlas
Geometric match to IL_5J7L_310
Geometric discrepancy: 0.1921
The information below is about IL_5J7L_310
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

7ZS5|1|1|U|834
7ZS5|1|1|G|835
7ZS5|1|1|A|836
7ZS5|1|1|A|837
7ZS5|1|1|G|838
*
7ZS5|1|1|U|855
7ZS5|1|1|G|856
7ZS5|1|1|G|857
7ZS5|1|1|A|858
7ZS5|1|1|G|859

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain BB
60S ribosomal protein L43-A
Chain BC
60S ribosomal protein L2-A
Chain BS
60S ribosomal protein L19-A

Coloring options:


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