3D structure

PDB id
7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGACGAAG*UCGAA
Length
13 nucleotides
Bulged bases
7ZS5|1|1|C|1391
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZS5_056 not in the Motif Atlas
Homologous match to IL_8C3A_063
Geometric discrepancy: 0.1309
The information below is about IL_8C3A_063
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

7ZS5|1|1|U|1388
7ZS5|1|1|G|1389
7ZS5|1|1|A|1390
7ZS5|1|1|C|1391
7ZS5|1|1|G|1392
7ZS5|1|1|A|1393
7ZS5|1|1|A|1394
7ZS5|1|1|G|1395
*
7ZS5|1|1|U|1415
7ZS5|1|1|C|1416
7ZS5|1|1|G|1417
7ZS5|1|1|A|1418
7ZS5|1|1|A|1419

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain BE
60S ribosomal protein L4-A
Chain BG
60S ribosomal protein L6-A
Chain BQ
60S ribosomal protein L17-A
Chain BZ
60S ribosomal protein L26-A
Chain Bf
60S ribosomal protein L32

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