IL_7ZS5_089

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7ZS5|1|1|A|2281, 7ZS5|1|1|C|2287, 7ZS5|1|1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZS5_089 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1816

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZS5|1|1|C|2277
7ZS5|1|1|C|2278
7ZS5|1|1|A|2279
7ZS5|1|1|A|2280
7ZS5|1|1|A|2281
7ZS5|1|1|U|2282
7ZS5|1|1|G|2283
7ZS5|1|1|C|2284
7ZS5|1|1|C|2285
7ZS5|1|1|U|2286
7ZS5|1|1|C|2287
7ZS5|1|1|G|2288
*
7ZS5|1|1|C|2304
7ZS5|1|1|G|2305
7ZS5|1|1|C|2306
7ZS5|1|1|G|2307

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA