IL_7ZTA_027

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7ZTA|1|16S1|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_027 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1104

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7ZTA|1|16S1|G|446
7ZTA|1|16S1|G|447
7ZTA|1|16S1|A|448
7ZTA|1|16S1|G|449
7ZTA|1|16S1|G|450
*
7ZTA|1|16S1|C|483
7ZTA|1|16S1|G|484
7ZTA|1|16S1|U|485
7ZTA|1|16S1|U|486
7ZTA|1|16S1|A|487
7ZTA|1|16S1|C|488

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S041

30S ribosomal protein S4

Chain S161

30S ribosomal protein S16