IL_7ZTA_076

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_076 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.0695

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7ZTA|1|23S1|G|188
7ZTA|1|23S1|G|189
7ZTA|1|23S1|A|190
7ZTA|1|23S1|A|191
7ZTA|1|23S1|C|192
7ZTA|1|23S1|U|193
7ZTA|1|23S1|G|194
*
7ZTA|1|23S1|C|201
7ZTA|1|23S1|U|202
7ZTA|1|23S1|A|203
7ZTA|1|23S1|A|204
7ZTA|1|23S1|G|205
7ZTA|1|23S1|U|206
7ZTA|1|23S1|A|207
7ZTA|1|23S1|C|208

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L281

50S ribosomal protein L28

Chain L351

50S ribosomal protein L35