IL_7ZTA_081

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7ZTA|1|23S1|A|504, 7ZTA|1|23S1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_081 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0751

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7ZTA|1|23S1|G|481
7ZTA|1|23S1|A|482
7ZTA|1|23S1|A|483
7ZTA|1|23S1|C|484
*
7ZTA|1|23S1|G|496
7ZTA|1|23S1|A|497
7ZTA|1|23S1|G|498
7ZTA|1|23S1|U|499
7ZTA|1|23S1|G|500
7ZTA|1|23S1|A|501
7ZTA|1|23S1|A|502
7ZTA|1|23S1|A|503
7ZTA|1|23S1|A|504
7ZTA|1|23S1|A|505
7ZTA|1|23S1|G|506
7ZTA|1|23S1|A|507
7ZTA|1|23S1|A|508
7ZTA|1|23S1|C|509

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L221

50S ribosomal protein L22

Chain L241

50S ribosomal protein L24