IL_7ZTA_111

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7ZTA|1|23S1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_111 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3076

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7ZTA|1|23S1|G|1087
7ZTA|1|23S1|A|1088
7ZTA|1|23S1|A|1089
7ZTA|1|23S1|A|1090
7ZTA|1|23S1|G|1091
*
7ZTA|1|23S1|C|1100
7ZTA|1|23S1|U|1101
7ZTA|1|23S1|C|1102

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L361

50S ribosomal protein L36