IL_7ZTA_115

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_115 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0651

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7ZTA|1|23S1|A|1262
7ZTA|1|23S1|U|1263
7ZTA|1|23S1|A|1264
7ZTA|1|23S1|A|1265
7ZTA|1|23S1|G|1266
7ZTA|1|23S1|U|1267
7ZTA|1|23S1|A|1268
7ZTA|1|23S1|A|1269
*
7ZTA|1|23S1|U|2011
7ZTA|1|23S1|G|2012
7ZTA|1|23S1|A|2013
7ZTA|1|23S1|A|2014
7ZTA|1|23S1|A|2015
7ZTA|1|23S1|U|2016
7ZTA|1|23S1|U|2017

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L221

50S ribosomal protein L22

Chain L321

50S ribosomal protein L32