IL_7ZTA_165

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_165 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1043

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7ZTA|1|23S1|C|2466
7ZTA|1|23S1|C|2467
7ZTA|1|23S1|A|2468
7ZTA|1|23S1|A|2469
7ZTA|1|23S1|G|2470
*
7ZTA|1|23S1|C|2480
7ZTA|1|23S1|G|2481
7ZTA|1|23S1|A|2482
7ZTA|1|23S1|C|2483
7ZTA|1|23S1|G|2484

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain ATR1

Transfer RNA; tRNA

Chain L161

50S ribosomal protein L16

Chain L361

50S ribosomal protein L36