IL_7ZUW_010

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.0967

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7ZUW|1|2|U|117
7ZUW|1|2|U|118
7ZUW|1|2|A|119
7ZUW|1|2|U|120
7ZUW|1|2|U|121
7ZUW|1|2|U|122
*
7ZUW|1|2|A|295
7ZUW|1|2|U|296
7ZUW|1|2|U|297
7ZUW|1|2|C|298
7ZUW|1|2|A|299

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AI

40S ribosomal protein S8-B