IL_7ZUW_013

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7ZUW|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_013 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.2438

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7ZUW|1|2|G|204
7ZUW|1|2|U|205
7ZUW|1|2|A|206
*
7ZUW|1|2|U|259
7ZUW|1|2|U|260
7ZUW|1|2|U|261
7ZUW|1|2|U|262
7ZUW|1|2|C|263

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AI

40S ribosomal protein S8-B