IL_7ZUW_027

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7ZUW|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_027 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3674

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7ZUW|1|2|G|514
7ZUW|1|2|A|515
7ZUW|1|2|G|516
*
7ZUW|1|2|C|536
7ZUW|1|2|G|537
7ZUW|1|2|A|538
7ZUW|1|2|G|539
7ZUW|1|2|G|540
7ZUW|1|2|A|541
7ZUW|1|2|A|542
7ZUW|1|2|C|543

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain Ae

40S ribosomal protein S30-A