IL_7ZUW_070

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

7ZUW|1|2|U|1370, 7ZUW|1|2|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_070 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.1893

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZUW|1|2|G|1352
7ZUW|1|2|U|1353
7ZUW|1|2|G|1354
*
7ZUW|1|2|U|1369
7ZUW|1|2|U|1370
7ZUW|1|2|A|1371
7ZUW|1|2|U|1372
7ZUW|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AQ

40S ribosomal protein S16-A

Chain AT

40S ribosomal protein S19-A

Chain AU

RPS20 isoform 1