IL_7ZUW_124

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_124 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1157

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZUW|1|5|C|759
7ZUW|1|5|U|760
7ZUW|1|5|G|761
7ZUW|1|5|A|762
7ZUW|1|5|U|763
7ZUW|1|5|G|764
*
7ZUW|1|5|C|769
7ZUW|1|5|G|770
7ZUW|1|5|G|771
7ZUW|1|5|A|772
7ZUW|1|5|U|773
7ZUW|1|5|G|774

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BK

60S ribosomal protein L13-A

Chain BZ

60S ribosomal protein L28

Chain Bn

60S ribosomal protein L42-A