IL_7ZUW_139

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_139 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1479

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7ZUW|1|5|A|1007
7ZUW|1|5|U|1008
7ZUW|1|5|U|1009
7ZUW|1|5|A|1010
*
7ZUW|1|5|U|1042
7ZUW|1|5|U|1043
7ZUW|1|5|C|1044
7ZUW|1|5|U|1045

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BD

RPL5 isoform 1

Chain BI

RPL10 isoform 1