IL_7ZUW_185

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7ZUW|1|5|U|2210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_185 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.3945

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7ZUW|1|5|G|2207
7ZUW|1|5|A|2208
7ZUW|1|5|A|2209
7ZUW|1|5|U|2210
7ZUW|1|5|G|2211
*
7ZUW|1|5|C|2236
7ZUW|1|5|G|2237
7ZUW|1|5|C|2238

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AB

40S ribosomal protein S1-A