IL_7ZUX_018

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7ZUX|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_018 not in the Motif Atlas

Geometric match to IL_5FQ5_002

Geometric discrepancy: 0.3647

The information below is about IL_5FQ5_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7ZUX|1|2|C|275
7ZUX|1|2|C|276
*
7ZUX|1|2|G|279
7ZUX|1|2|U|280
7ZUX|1|2|G|281

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain EV

60S ribosomal protein L24-A