IL_7ZUX_021

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7ZUX|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_021 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0753

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7ZUX|1|2|G|363
7ZUX|1|2|G|364
7ZUX|1|2|G|365
*
7ZUX|1|2|C|376
7ZUX|1|2|G|377
7ZUX|1|2|A|378
7ZUX|1|2|U|379
7ZUX|1|2|U|380
7ZUX|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A