IL_7ZUX_031

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_031 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.2026

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7ZUX|1|2|A|550
7ZUX|1|2|G|551
7ZUX|1|2|G|552
7ZUX|1|2|G|553
7ZUX|1|2|C|554
7ZUX|1|2|A|555
7ZUX|1|2|A|556
7ZUX|1|2|G|557
*
7ZUX|1|2|C|587
7ZUX|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DC

40S ribosomal protein S2

Chain DJ

40S ribosomal protein S9-A

Chain De

40S ribosomal protein S30-A