IL_7ZUX_055

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_055 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0923

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZUX|1|2|G|1111
7ZUX|1|2|G|1112
7ZUX|1|2|A|1113
7ZUX|1|2|G|1114
7ZUX|1|2|U|1115
7ZUX|1|2|A|1116
7ZUX|1|2|U|1117
7ZUX|1|2|G|1118
*
7ZUX|1|2|U|1129
7ZUX|1|2|G|1130
7ZUX|1|2|A|1131
7ZUX|1|2|A|1132
7ZUX|1|2|A|1133
7ZUX|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DX

40S ribosomal protein S23-A

Chain Em

60S ribosomal protein L41-A