3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
AAUA*UUCU
Length
8 nucleotides
Bulged bases
7ZUX|1|2|A|1346, 7ZUX|1|2|U|1347
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZUX_072 not in the Motif Atlas
Homologous match to IL_4V88_456
Geometric discrepancy: 0.1782
The information below is about IL_4V88_456
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_76458.1
Basepair signature
cWW-cSH-L-cWW
Number of instances in this motif group
2

Unit IDs

7ZUX|1|2|A|1345
7ZUX|1|2|A|1346
7ZUX|1|2|U|1347
7ZUX|1|2|A|1348
*
7ZUX|1|2|U|1377
7ZUX|1|2|U|1378
7ZUX|1|2|C|1379
7ZUX|1|2|U|1380

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain DQ
40S ribosomal protein S16-A
Chain DU
40S ribosomal protein S20
Chain Dg
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


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