3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CGCU*AAAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZUX_082 not in the Motif Atlas
Homologous match to IL_8CRE_469
Geometric discrepancy: 0.4051
The information below is about IL_8CRE_469
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11399.2
Basepair signature
cWW-cHW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

7ZUX|1|2|C|1644
7ZUX|1|2|G|1645
7ZUX|1|2|C|1646
7ZUX|1|2|U|1647
*
7ZUX|1|2|A|1753
7ZUX|1|2|A|1754
7ZUX|1|2|A|1755
7ZUX|1|2|A|1756
7ZUX|1|2|G|1757

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain 6
Transfer RNA; tRNA
Chain DX
40S ribosomal protein S23-A
Chain De
40S ribosomal protein S30-A
Chain Em
60S ribosomal protein L41-A

Coloring options:


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